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Table of Content - Volume 19 Issue 1- July 2021


 

Study of epidemiology and etiology in suspected cases of central nervous system infections in paediatric population at a tertiary hospital

 

Pushpa Yadav1, Shivprasad Mundada2*

 

1Junior Resident, 2Professor and HOD, Department of Paediatrics, Vilasrao Deshmukh Government Institute of Medical Sciences, Latur, Maharashtra, INDIA.

Email: dhanmati25@gmail.com

 

Abstract              Background: Infection of the central nervous system (CNS) is a life- threatening condition. can present with variety of clinical syndromes (acute bacterial meningitis, acute aseptic meningitis, chronic meningitis or space occupying lesions). The present study is an attempt to diagnose the etiology of the suspected CNS infection in paediatric population with consideration of epidemiological factors. This will help in guiding the initiation of empirical therapy while awaiting the investigation results and therefore, contributing in better outcome of the patients. Material and Methods: Present study was single-center, prospective, observational study conducted in cases between 1month to 12 years of age admitted in Paediatric ward of tertiary care center with clinical features suggestive of CNS infection. Results: The study population included 90 patients clinically suspected to have CNS infection maximum number of patients (44) belonged to 2-5 years age group and least cases (8) in 11-15 years of age group. Male were 51 (56.7%) and females 39 (43.3%) of all cases with M:F ratio of 1.3:1. The presenting features included fever in all 90 cases (100%), altered sensorium in 70(77.8%), seizures in 87(96.7%), posturing in 23(25.6%) and signs of meningitis like irritability, headache, vomiting, neck rigidity in 64(71.1%) cases. Based on history, clinical features, CSF analysis and other diagnostic tests, diagnosis of viral meningitis/encephalitis was made in 50 cases (55.6%), bacterial in 30 (33.3%), TBM in 8 (8.9%), and Rickettsial and Fungal (Candida albicans) meningitis in 1 (1.1%) case each. Outcome wise, total deaths i.e. case fatality rate (CFR) was 13 (14.4%) and 74 (82.2%) patients were discharged. Conclusion: In present study most common cause of CNS infection in children was viral meningitis/encephalitis, however below 1 year of age the most common cause is bacterial meningitis. The most common age group affected is below 5 years of age. Since CNS infections can be caused by almost any agent like bacteria, viral, tubercular, fungal, rickettsial; a wide panel of agents should be studied wherever feasible. Treatment with steroids and anticonvulsants should be based on clinical judgement.

Keywords: CNS infection, bacterial meningitis, viral, tubercular, fungal

 

INTRODUCTION

Infection of the central nervous system (CNS) is a life- threatening condition can present with variety of clinical syndromes (acute bacterial meningitis, acute aseptic meningitis, chronic meningitis or space occupying lesions).1 Nearly any agent has the capacity to cause infection of the CNS, hence, epidemiological considerations, appreciation of the presenting clinical syndrome and cerebrospinal fluid (CSF) analysis guides the way to diagnosis. The incidence of acute encephalitis syndrome (AES) in western countries is 7.4 per 100,000 population per year. In tropical countries like India, it is 6.4 (3.5 to 7.4) per 100,000 population per year.2 The incidence is higher in children <1 year and adults >65 years. Aetiology of AES can be both infective and non-infective. The infective etiology has a wide spectrum ranging from bacterial, viral, tubercular, protozoal, fungal and spirochetal.2 Although viruses are considered to be the most common cause often cases remain undiagnosed due to lack of definitive diagnostic tests in many centers. Around 0.5 to 2.6% of hospital admissions are acute bacterial meningitis (ABM) with mortality of around 16-30% in developing nations.3 The clinical picture usually consists of a prodromal phase with fever, malaise, headache (one to three days) followed by specific CNS features with increasing fever like decrease in consciousness level, irritability, seizures, abnormal movements and even paralysis or comatose state. The positive signs being neck rigidity, Kernig’s and Brudzinski’s sign with associated CSF pleocytosis.4 The present study is an attempt to diagnose the etiology of the suspected CNS infection in paediatric population with consideration of epidemiological factors. This will help in guiding the initiation of empirical therapy while awaiting the investigation results and therefore, contributing in better outcome of the patients.

              

MATERIAL AND METHODS

Present study was single-center, prospective, observational study conducted in Department of Paediatrics, Vilasrao Deshmukh Government Institute of Medical Sciences, Latur, India. Study duration was of 18 months. Approval from the Institutional Ethics Committee was taken before starting the study in the tertiary care center. A written informed consent was taken prior to data collection from the parents/caregivers of the patients.

Inclusion criteria:

Cases between 1month to 12 years of age admitted in Paediatric ward of tertiary care center with clinical features suggestive of CNS infection

 

 

Exclusion criteria:

  • Patients who are known case of seizure disorder or febrile convulsions
  • Patients with non-infectious CNS disorders due to hypoxic, ischemic, vascular, toxic and metabolic causes.

On admission, details of the patients in terms of age, gender and address were noted. The parents were interviewed about the complaints pertaining to central nervous system like fever, convulsions, altered consciousness or behavior; past and family history holding importance with respect to central nervous system involvement like immunization, developmental, seizure disorder, history of chronic infections or conditions like tuberculosis, immunocompromised states, diabetes, hypertension, surgery and medications. The patients were then thoroughly examined including anthropometry and signs of meningitis or raised intracranial pressure like neck rigidity, Kernig’s and Brudzinski’s sign, bulging anterior fontanelle and papilledema and Glasgow coma scale scoring was done for all patients. Basic blood investigations done were complete blood count, liver and kidney function test, serum electrolyte, and blood sugar level. Blood culture and sensitivity by BACTEC method was done in all cases. Other tests done as per indications of the case were Dengue Rapid antigen test, Widal test, Peripheral smear (PS) for malarial parasite, Weil-Felix test, arterial blood gas (ABG), erythrocyte sedimentation rate (ESR), C-Reactive protein (CRP), HIV, HBsAg and CBNAAT of gastric lavage, sputum and Mantoux test. Cerebrospinal fluid (CSF) was collected by lumbar puncture after getting informed consent of parents of patients. CSF was then sent for routine microscopy, biochemistry for protein and sugar levels, staining like Gram and AFB, culture and sensitivity, CSF CBNAAT (Gene-Xpert for MTB) and CSF sample to National Institute of Virology, Pune for virology study with filled form like JE IgM antibody, HSV PCR etc. Imaging studies were also done like Chest Xray, USG(A+P), USG skull, CT brain and MRI brain based on the indications. Data was collected and compiled using Microsoft Excel, analysed using SPSS 23.0 version. Statistical analysis was carried by descriptive analysis.


RESULTS

The study population included 90 patients clinically suspected to have CNS infection in the age group of 1month to 12 years of age, out of which maximum number of patients (44) belonged to 2-5 years age group and least cases (8) in 11-15 years of age group. Male were 51 (56.7%) and females 39 (43.3%) of all cases with M:F ratio of 1.3:1.

 

Table 1: Age and gender distribution

Age        group    in years

Frequency

Percent

≤ 1

11

12.2

2 to 5

44

48.9

6 to 10

27

30.0

11 to 15

8

8.9

Gender

 

 

Female

39

43.3

Male

51

56.7

The presenting features included fever in all 90 cases (100%), altered sensorium in 70(77.8%), seizures in 87(96.7%), posturing in 23(25.6%) and signs of meningitis like irritability, headache, vomiting, neck rigidity in 64(71.1%) cases.

 

Table 2: Clinical features and history

Clinical features and history

Present

Absent

Frequency

Percent

Frequency

Percent

Seizures

87

96.7

3

3.3

Altered sensorium

70

77.8

20

22.2

Posturing

23

25.6

67

74.4

Significant past history related to CNS

4

4.4

86

95.6

Significant family history related to CNS

4

4.4

86

95.6

Signs of meningitis

64

71.1

26

28.9

The aetiological diagnosis with evidence of etiology in CSF could be made in 1 case for viral encephalitis with JE IgM positive, CSF culture showed growth in 12 cases of bacterial meningitis, CSF CBNAAT detected Mycobacterium in 1 case, Gastric lavage CBNAAT in 1 case and CSF Gram staining was positive in total 8 cases and ZN staining for AFB in 2 cases. Otherwise, based on history, clinical features, CSF analysis and other diagnostic tests, diagnosis of viral meningitis/encephalitis was made in 50 cases (55.6%), bacterial in 30 (33.3%), TBM in 8 (8.9%), and Rickettsial and Fungal (Candida albicans) meningitis in 1 (1.1%) case each.

 

Table 3: Aetiology of CNS infection

Aetiology of CNS infection

Frequency

Percent

Bacterial

30

33.3

 

Fungal

1

1.1

 

TBM

8

8.9

 

Rickettsial

1

1.1

 

Viral

50

55.6

 

Total

90

100.0

 

The blood culture showed growth in 22 cases of which MRSA was seen in 6(6.7%); Salmonella enteritidis and Streptococcus pyogenes in 3 cases each(3.3%); Non-fermenters and Pseudomonas aeruginosa in 2 cases each(2.2%); Streptococcus pneumoniae, Group B Streptococcus, E. coli, Citrobacter, Acinetobacter and Candida albicans in 1 case each(1.1%). CSF culture showed growth in 12 cases of which Salmonella enteritidis, Pseudomonas aeruginosa, MRSA and Non-fermenters were seen in 2(2.2%) cases each while E. coli, CoNS, Citrobacter, Acinetobacter were seen in 1 case each (1.1%).

Table 4: Blood and Cerebrospinal fluid (CSF) culture of organisms.

 

Blood culture growth

Cerebrospinal fluid (CSF) culture

organism

Frequency

Percent

Frequency

Percent

Acinetobacter spp

1

1.1

1

1.1

Citrobacter spp

1

1.1

1

1.1

E.Coli spp

1

1.1

1

1.1

MRSA

6

6.7

2

2.2

Pseudomonas aeruginosa

2

2.2

2

2.2

Salmonella ENTERITIDIS

3

3.3

2

2.2

streptococcus pneumoniae

1

1.1

 

 

Grp B streptococcus

1

1.1

 

 

streptococcus pyogenes

3

3.3

 

 

Candida Albicans

1

1.1

 

 

CONS

 

 

1

1.1

Non-fermenters

2

2.2

2

2.2

No growth

68

75.6

78

86.7

Total

90

100.0

90

100.0

Outcome wise, total deaths i.e. case fatality rate (CFR) was 13 (14.4%) and 74 (82.2%) patients were discharged.

 


Table 5: Outcome

Outcome

Frequency

Percent

DAMA

2

2.2

Death

13

14.4

Discharge

74

82.2

Referred

1

1.1

 

DISCUSSION

There is no standard laboratory diagnostic strategy for investigation of encephalitis and even experienced physicians are often uncertain about the cause, appropriate therapy and prognosis.5 Many a times even after an extensive diagnostic workup it may not be possible to identify the specific organism6 and hence a detailed examination and workup is needed as many conditions, such as infections are well treatable. However, not all febrile illnesses are due to infections and hence a detailed enquiry of other factors like exposure to drugs, toxins, immunization, exposure to high temperature etc. should be done.7 In present study, prevalence of CNS infection was maximum in the age group of 2-5 years (48.9%, 44 cases) which is in accordance with study by S.A Karmarkar et al.8 and C.M. Bokade et al. 9 where too the mean age group was 3.2±2.9 years. The male to female ratio M:F in present study is 1.3:1 which is comparable to studies by Garg et al.10, SK Rathore et al.2, SA Karmarkar et al.8 and Debnath et al. 11 where the M:F ratio is 2:1, 1.6:1, 1.7:1 and 1.8:1 respectively. The lower prevalence in females can be attributed to production of gamma-globulin regulated by certain factors on X chromosome.10,12 The higher incidence of CNS infections in males compared to females can also be explained by the time spent outdoor by male children and indulging in unhygienic activities resulting in an increased exposure to certain vectors and agents which might increase the risk of infection. It is also influenced by certain social and cultural practices.13

The Case fatality rate (CFR) in present study was 13(14.4%) which is comparable to studies by Garg et al. (10.5%)10, Debnath et al. (13.9%)11 and C.M. Bokade et al.9 (19.3%). The mortality was more in cases of TBM (3 cases) and Dengue encephalitis 3 cases (3.3% each). The comparatively higher mortality in TBM could be attributed to late presentation, delay in diagnosis, poor nutrition and complications in these cases like hydrocephalus and cerebral infarcts evident on MRI of these cases.14 Similarly, cases of Dengue encephalitis had complications like refractory shock, coagulopathy and respiratory failure which contributed to death. 15 The diagnosis of viral meningitis/encephalitis was made in 50 cases (55.6%), bacterial in 30(33.3%), TBM in 8(8.9%), and Rickettsial and Fungal (candida albicans) meningitis in 1(1.1%) case each. This is similar to study by CM Bokade et al.9 in which viral (46.59%), bacterial (22.16%), TBM (15.3%) and cerebral malaria in 15.9% of cases. Also, study done by Huttunen et al.16, showed comparable results with aetiological agent identified in 56 cases (85%) of which 38% were bacterial meningitis, 45% viral meningitis/encephalitis, 16% neuroborreliosis and 1 child with fungal (Candida albicans) infection. The CSF study in this present study supported the evidence of raised CSF leukocytes mostly>100/cumm., predominantly polymorphs, raised protein and low sugar in bacterial meningitis compared to viral meningitis as is also evident in study conducted by Pandey et al. 17. CSF Gram staining showed Gram positive cocci and Gram -negative bacilli in 4 cases each out of which 7 cases also showed growth of organism on CSF culture. CSF ZN staining detected AFB in 2 cases while CBNAAT detected mycobacterium in CSF of 1 case and gastric lavage of 1 case. The viral etiology of CNS infection was considered in 50 cases (55.6%) more prevalent in age group of 2-10 years, of which only one case was JE IgM positive. In study conducted by Davies et al.18 on factors influencing PCR detection of viruses in cerebrospinal fluid of patients with suspected CNS infection found that virus was not detected in 70% cases where viral etiology was thought to be likely, with a consequent negative predictive value (NPV) for the assay of 82.5% and therefore a negative result can only be used with moderate confidence to rule out CNS viral infection. Neuroimaging modalities used were USG skull, CT Brain and MRI. MRI T2/FLAIR studies suggested likely HSV-encephalitis in 3 cases showing hyperintensities in left temporal lobe, right hippocampus, amygdale, left hypothalamus, bilateral para-falcine occipital cortex20 in one of the cases who presented with blindness with prior history of fever and rash. Vasanthapuram et al.20 and Samanta et al.21 have in their studies showed the significant role of DENV as an under- recognized causative agent of AES. Chokephaibulkit K et al. 22 conducted a prospective study of Thai children identified viral agents in 26(65%) of 40 children of which Dengue virus(8) was in maximum number of cases followed by JEV (6), HSV (4), (3), mumps(2), enterovirus(1), VZV(1) and rabies(1). SA Karmarkar et al.8 conducted a study in which most common viral cause was Enterovirus followed by JEV and HSV. SK Rathore et al.2 did a study which showed HSV I or II as most common cause followed by measles, JEV and DENV. Huttumen et al.16 conducted a study in which enteroviruses were most common accounting for 22% of all viruses and 44% of proven meningitis/encephalitis. Other common viruses were VZV and HHV6. Bacterial meningitis was diagnosed in 30(33.3%) cases, maximum number of cases in age group of 2-5 years followed by less than 1 year of age; of which CSF culture positive were 12(13.3%) cases, blood culture positive 22(24.4%) cases and both CSF and blood culture positive 3 cases (MRSA (2) and Salmonella enteritidis (1)). This lower rate of detection of bacteria in CSF is comparable to study conducted by Garg et al.10 and Debnath et al. (13.9%)11 which can be attributed to prior use of antibiotic, contamination of blood culture sample and poor quality of blood culture medium. The most common organism isolated in blood was MRSA in 6 cases and in CSF were MRSA, Salmonella enteritidis, Non-fermenters and Pseudomonas aeruginosa in 2 cases each. The cases which did not show growth in both blood and CSF but were diagnosed as bacterial meningitis based on history, clinical features and CSF analysis showing turbidity, predominant polymorphs, raised protein, low sugar levels and positive Gram stain results in few cases. Pyogenic meningitis was most common cause in studies by SA Karmarkar et al.8, Garg et al. 10, Adhikari et al.23 and Debnath et al.11 where the common bacterial isolates from both CSF and blood were Klebsiella pneumoniae, followed by Non-fermenters and Streptococcus pyogenes. E. coli and Staphylococcus aureus were the most common cause of pyogenic meningitis in the study by Adhikary et al. 23 as seen in our present study. Tubercular meningitis was diagnosed in 8 (8.9%) cases 5 were in age group of 2-5 years. A history of contact with pulmonary tuberculosis case on antitubercular treatment was found in 4 cases, all of them being parent of the patient. The usual presentation was history of prolonged fever of 10-15days, altered sensorium and convulsions with intermittent posturing. The CSF analysis showed turbidity in 5(62.5%) cases, no cob web and colourless fluid. AFB was detected by ZN staining in 2 cases while CSF CBNAAT and gastric lavage CBNAAT detected Mycobacterium in 1 case each. In 1 case, blood PCR detected mycobacterium. The CSF leukocyte count in most cases was >100/cumm., predominant lymphocytes in all cases, raised protein in 7(87.5%) and low glucose in 7(87.5%) cases. MRI and CT brain showed changes suggestive of tubercular meningitis like basal exudates, infarcts, and communicating hydrocephalous in most of the cases. CSF ADA levels were >10 U/L in 3 cases. The similar prevalence of TBM was found in study by SA Karmarkar et al.8 where TBM cases accounted for 7.9% of total cases, while it was higher in study conducted by CM Bokade et al. 9 where TBM was diagnosed in 15.3% cases. In this present study Candida albicans was detected from blood culture of 1 patient who was 40 days old and had history of NICU admission in view of sepsis. The patient succumbed due to multiorgan failure. Rickettsial encephalitis was diagnosed in patient based on clinical features of fever with maculopapular rash involving palms and soles, history of contact with cattle, hand and leg oedema, hepatomegaly and blood investigations showing leukocytosis, raised liver transaminases, raised titers of OX-19 and OX-2 on Weil-Felix test and improvement on treatment with Injection Chloramphenicol.

 

CONCLUSION

In present study most common cause of CNS infection in children was viral meningitis/encephalitis, however below 1 year of age the most common cause is bacterial meningitis. The most common age group affected is below 5 years of age. Since CNS infections can be caused by almost any agent like bacteria, viral, tubercular, fungal, rickettsial; a wide panel of agents should be studied wherever feasible. Treatment with steroids and anticonvulsants should be based on clinical judgement.

 

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